Before installing HippMapp3r

Acknowledging this work

If you wish to include results generated by HippMapp3r in a publication, please include a line such as the following:

  • Whole hippocampal segmentation was performing using the HippMapp3r algorithm ( based on a convolutional neural network.


If you use HippMapp3r in your work please cite our paper:

Goubran, M., Ntiri E., Akhavein, H., Holmes, M., Nestor, S., Ramirez, J., Adamo, S., Gao, F., Ozzoude, M., Scott, C., Martel, A., Swardfager, W., Masellis, M., Swartz, R., MacIntosh B, and Black, SE. “Hippocampal segmentation for atrophied brains using three-dimensional convolutional neural networks”. Human Brain Mapping. In-Press (2019).


HippMapp3r is licensed under the terms of the GNU General Public License v3.0.

HippMapp3r is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. You should have received a copy of GNU General Public License v3.0 along with HippMapp3r.

The code is released for academic research use only. For commercial use, please contact